PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn267741

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 258aa MW: 29875.3 Da PI: 6.1132

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn267741	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.9	1.1e-25	78	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+re++ +++ + + tr gC a+l+v +++ kw+vtk++++HnH+l+ Achn267741 78 EFYVAYGRRTGFTVRIHHNRRSRINNTVIGQDFVCSKEGFREKKYVCrNDRVLPPPPITREGCPAMLRVALRDGVKWVVTKFVKDHNHSLM 168 6***************************************998772344445899******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-23	78	168	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MECTSSQAFD SDEDERCLPV ESYNQNDFTD DKLSKSVDLY ISEDDKITEK YAGNSASSGN 60 AIEPHIGMEF DSRDEAREFY VAYGRRTGFT VRIHHNRRSR INNTVIGQDF VCSKEGFREK 120 KYVCRNDRVL PPPPITREGC PAMLRVALRD GVKWVVTKFV KDHNHSLMSP SKVPWRGSGK 180 NLINEDEKDQ RIRELTIELY NERQRCKRRC AAYQEQLHVV LTFVEEHVEH LSRSVQDMVQ 240 RIRGLENEPL DGSDWDQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	207	RQRCKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028074394.1	1e-160	protein FAR1-RELATED SEQUENCE 12-like
Refseq	XP_028074395.1	1e-160	protein FAR1-RELATED SEQUENCE 12-like
TrEMBL	A0A2R6PPI3	0.0	A0A2R6PPI3_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	XP_002527269.1	1e-135	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14445	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-36	FAR1 family protein