PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn268161
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 168aa    MW: 19142.8 Da    PI: 10.0416
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn268161genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.94.3e-261059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                ri+n++ rqvtfskRr g+lKKA+E  +LCdaev +iifsst+klye++s
  Achn268161 10 RIDNTTSRQVTFSKRRSGLLKKAKEFAILCDAEVGLIIFSSTDKLYEFAS 59
                8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.1E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.235161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-31282IPR002100Transcription factor, MADS-box
CDDcd002651.74E-41278No hitNo description
PRINTSPR004049.4E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-273859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MGRGKIVIMR IDNTTSRQVT FSKRRSGLLK KAKEFAILCD AEVGLIIFSS TDKLYEFAST  60
SMKSVIERYS KSKDEHHQLH DQESEFKGNL MHQENVELYK KGNLIRQENM ELYKKVYGTR  120
NVIEVTGITQ SSYGFSIGKD SHVPFHLHLS QPEPQSHVIP ARAARSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-22177177MEF2C
5f28_B1e-22177177MEF2C
5f28_C1e-22177177MEF2C
5f28_D1e-22177177MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028068985.14e-74MADS-box transcription factor 23-like isoform X2
SwissprotQ9SZJ69e-44AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLA0A2R6R5951e-89A0A2R6R595_ACTCH; MADS-box transcription factor
STRINGXP_009623629.15e-60(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6792056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.14e-46AGAMOUS-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]