PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn268801

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

MYB_related

Protein Properties

Length: 198aa MW: 21500 Da PI: 5.0227

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn268801	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.4	9.1e-10	12	55	4	45
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++e d+ + +a + ++ + +W++Ia+ ++ g+t +++k+++ Achn268801 12 WSKEQDKSFENALATYPEEsldRWEKIAADVQ-GKTFEEIKHHYE 55 ***************99*********.********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.841	4	58	IPR017877	Myb-like domain
SMART	SM00717	2.0E-6	8	60	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.77E-11	10	65	IPR009057	Homeodomain-like
Pfam	PF00249	5.4E-8	12	55	IPR001005	SANT/Myb domain
CDD	cd00167	1.27E-7	12	58	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-4	12	56	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MTADESNNSS GWSKEQDKSF ENALATYPEE SLDRWEKIAA DVQGKTFEEI KHHYELLVDD 60 INDIESGRVP LPCYNSSSDG STSHSGEEGT SKKGGHGGNF NSDSNHGGKA SRSDQERRKG 120 IAWTEDEHSS PEPETRDNEP SRRQVSPKGV AGARTDGDVA RRSLTETVEA CRGHVGPLQV 180 QIEPFRGSSG SVMAHRS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-19	12	77	11	76	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021811355.1	4e-70	transcription factor SRM1
Refseq	XP_021811356.1	4e-70	transcription factor SRM1
Refseq	XP_028104917.1	3e-72	transcription factor SRM1-like
Refseq	XP_028104918.1	3e-72	transcription factor SRM1-like
Refseq	XP_028104920.1	3e-72	transcription factor SRM1-like
Swissprot	Q9FNN6	4e-41	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A2R6PC12	7e-71	A0A2R6PC12_ACTCH; Transcription factor DIVARICATA like
STRING	XP_008221083.1	1e-67	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4149	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	4e-38	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]