PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn268811

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

MYB_related

Protein Properties

Length: 174aa MW: 18270.9 Da PI: 10.8235

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn268811	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.4	4.4e-10	4	45	6	47
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 teE l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky Achn268811 4 TEESRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 45 89***************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.576	1	50	IPR017930	Myb domain
Pfam	PF00249	5.7E-8	4	45	IPR001005	SANT/Myb domain
SMART	SM00717	0.0093	4	48	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.3E-8	4	44	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-12	5	48	IPR006447	Myb domain, plants
CDD	cd00167	2.98E-7	5	46	No hit	No description
SuperFamily	SSF46689	1.11E-11	5	51	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MTKTEESRLF LLGLDKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNKDRRRSS 60 IHDITSVNSG DVSVPQGPIT GQTNGSAAGA PGKSNKPAPQ TPGAPMGVGM YDAPTIGQPI 120 GPLVSAVGTP VNLPPPAHMA YGVRASVPAQ VVPGAPMNMG PMTYPMPHTS AHR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028115549.1	1e-101	transcription factor SRM1-like
Swissprot	Q9FNN6	4e-69	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A2R6PC12	1e-108	A0A2R6PC12_ACTCH; Transcription factor DIVARICATA like
STRING	Gorai.013G067600.1	2e-93	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4149	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	2e-71	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]