PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn270061

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

M-type_MADS

Protein Properties

Length: 121aa MW: 13326.3 Da PI: 9.831

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn270061	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	52.7	5.4e-17	18	60	1	43
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 k+ien snrqvtfsk r+g++ K +EL++L +a+va+i+ s+ Achn270061 18 KKIENISNRQVTFSKCRAGLFEKVNELCILSGAQVAIIVKSHG 60 68*************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	22.077	10	70	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.8E-23	10	69	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.23E-23	11	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.7E-16	12	32	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.0E-18	19	66	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.7E-16	32	47	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.7E-16	47	68	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MNNEKVKTTQ GRQKIEIKKI ENISNRQVTF SKCRAGLFEK VNELCILSGA QVAIIVKSHG 60 RRTFAFGHPN VDPVIDHYLA GNNSAAAASQ PCDAGNHPSV QACIFLLIFF LDNVRQLFKQ 120 *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028061644.1	7e-37	agamous-like MADS-box protein AGL62
Refseq	XP_028061661.1	7e-37	agamous-like MADS-box protein AGL62
Swissprot	Q9FKK2	7e-26	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	A0A2R6RC51	2e-52	A0A2R6RC51_ACTCH; Agamous-like MADS-box protein
STRING	Migut.N01120.1.p	4e-32	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2134	22	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-24	AGAMOUS-like 62

Publications ? help Back to Top
Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]