PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn271541
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 247aa    MW: 28116.8 Da    PI: 5.6443
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn271541genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.7e-07124168655
                 HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +++ ++RR++i ++ +eL +l+P         K+  ae+ + A +Y+k+Lq
  Achn271541 124 SIAAKQRRRKITDKTQELGKLIPGgH------KMKTAEMFQAAFKYMKYLQ 168
                 6788*******************944......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.915118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-10119177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.82E-8121171No hitNo description
Gene3DG3DSA:4.10.280.102.8E-10121175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-5124168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-7124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDLMGLQEHF TYPDACFDPL LLDPNQYSSF LSENYYPNFD NSTHISLSSD LFSPQLQEFH  60
PYPYPYPYPY PKRQKDNNYH AAELELTVPP CLVDDWFIIP NPPDLTLPAV VVKRGGSRSL  120
SAQSIAAKQR RRKITDKTQE LGKLIPGGHK MKTAEMFQAA FKYMKYLQAQ VGVLQSIASI  180
QGNEEPLYTR ELQALATSPN IQEKLYSSEN CLVPKQFVQT LANDREFQSN SLILRDLDQW  240
IQNSSG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028088160.11e-65transcription factor bHLH53-like
TrEMBLA0A2R6R1V40.0A0A2R6R1V4_ACTCH; Transcription factor bHLH52 like
STRINGVIT_10s0092g00030.t011e-57(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-30bHLH family protein