PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn272551

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 215aa MW: 24189.3 Da PI: 7.2347

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn272551	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00073	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C ++F++ L H +H Achn272551 56 YQCKTCERTFPSFQALGGHRASH 78 9***********99999998887 PP
2	zf-C2H2	11.1	0.0013	118	140	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H Achn272551 118 HECSICGAKFMSGQALGGHMRRH 140 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.0E-9	55	78	No hit	No description
Pfam	PF13912	3.7E-12	55	80	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.552	56	83	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.064	56	78	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	58	78	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.0E-9	113	140	No hit	No description
Pfam	PF13912	3.9E-12	118	141	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.023	118	140	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.39	118	140	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	120	140	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MYESNVTPTN LADFAESVIT EEEEYMANCL ILLSQARPYV CGEKGFNLTS KRFNVYQCKT 60 CERTFPSFQA LGGHRASHKK PKPTTTSLLL NEEVRIEAPS ERGPFYFNRT RSYSNKIHEC 120 SICGAKFMSG QALGGHMRRH RTGPVGTNTN LSLSALTGFE SDDHQETKRK EILLSLDMDL 180 NLPAPENDHH HQQQQNQKLP MVLSVAPTLV DCYY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028068862.1	2e-52	zinc finger protein ZAT5
TrEMBL	A0A2I4HJE3	1e-50	A0A2I4HJE3_JUGRE; zinc finger protein ZAT5-like
STRING	EOY18851	6e-49	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	8e-46	C2H2 family protein