PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn272571
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 481aa    MW: 53365.6 Da    PI: 4.6819
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn272571genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.95.8e-3448144196
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                 l+pGfrFhPtd+el+ +yLk+kv gk+++l ++i+e+d yk+ePwdLp k k+k+++  wyfFs  dkk+ +g r nrat++gyWk+tg+d++v++++
  Achn272571  48 LAPGFRFHPTDQELIGYYLKRKVCGKPFSL-NAISEIDSYKSEPWDLPgKsKLKSRDLGWYFFSAVDKKHGNGWRMNRATERGYWKTTGNDRPVIHSH 144
                 579***************************.89***************5347777778************************************9963 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-3742144IPR003441NAC domain
PROSITE profilePS5100532.32648192IPR003441NAC domain
PfamPF023651.0E-1550142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MALDLKGLLK HSLSLSLSIS LSTKPYFSLF TSPESLMDLD PAPAAPSLAP GFRFHPTDQE  60
LIGYYLKRKV CGKPFSLNAI SEIDSYKSEP WDLPGKSKLK SRDLGWYFFS AVDKKHGNGW  120
RMNRATERGY WKTTGNDRPV IHSHPQILKA DIASEDVLLP LSFYYEDTNS YVQELADLDN  180
DAQKLLLGMG ESYRAPEQPD GQHMFDFPVQ NDIYTKPVRH EYIGEPCNTV DSEDADYLLD  240
EPFLDTNDNT QFDDGSFLET NDLSNPVKTE SSCFDMVEDY LTFFDADDNS SQAMIFDSSK  300
MIGYENFDSH QTSLTQKCAN GGAQQGAMRG QQLLQGHDND VASTSKQKPG KYGSEIQHPF  360
IKQASCMFSS KDAALQLSST SHSSSSISVT ASIIHTRNIT STGSGTYRLL GKQADVSIIL  420
SFGLSYDDSS YANLEPMDDT LLGKSGSTSS WGWFYLILLW VLILSLSFKI GSCIYTCKAS  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-26421409105Stress-induced transcription factor NAC1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028124170.11e-120NAC domain-containing protein 78-like
TrEMBLA0A2R6PWA90.0A0A2R6PWA9_ACTCH; NAC domain-containing protein
STRINGVIT_13s0019g05240.t018e-74(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31412450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.18e-41NAC domain containing protein 2