PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn273201

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NF-YB

Protein Properties

Length: 219aa MW: 24237.2 Da PI: 6.3411

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn273201	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	152.3	8.9e-48	41	134	3	96
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +d+++P an++rim++ lP +aki+++ak+tvq+cvsefi f+tsea+d+c+re+rkt++++dllwa+a lGfedy+epl+++l++yre+e+ Achn273201 41 PHDQYMPAANIIRIMRRGLPPHAKIADEAKDTVQHCVSEFINFITSEANDRCHREQRKTVTAEDLLWAMARLGFEDYIEPLTLFLNRYREMESG 134 579****************************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.4E-43	40	139	IPR009072	Histone-fold
SuperFamily	SSF47113	3.87E-35	43	140	IPR009072	Histone-fold
Pfam	PF00808	5.6E-24	45	109	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.3E-15	73	91	No hit	No description
PRINTS	PR00615	2.3E-15	92	110	No hit	No description
PRINTS	PR00615	2.3E-15	111	129	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MLDAETQIDT LESYSALTGA HGAGNSSNIN REQPILLHDR PHDQYMPAAN IIRIMRRGLP 60 PHAKIADEAK DTVQHCVSEF INFITSEAND RCHREQRKTV TAEDLLWAMA RLGFEDYIEP 120 LTLFLNRYRE MESGRTSMHG EPFVKCTLDL GLPPGPTNYG LKAWPAGQAH GVFDAHGAMM 180 MNGMNNYYRD NHGGGSSSSG QAAALPGFDP YVQFKRSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	4e-47	40	130	7	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028073480.1	4e-73	nuclear transcription factor Y subunit B-9-like
TrEMBL	A0A2R6QD15	1e-152	A0A2R6QD15_ACTCH; Nuclear transcription factor Y subunit B-9 like
STRING	Gorai.004G033600.1	2e-58	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	9e-55	NF-YB family protein