PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn273861

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Nin-like

Protein Properties

Length: 801aa MW: 90534.6 Da PI: 7.9613

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn273861	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	32.7	1.5e-10	251	277	26	52
RWP-RK 26 gvclTvLKriCRqyGIkRWPhRkiksl 52 v+ ++ Kr CR+yGI+RWP R + ++ Achn273861 251 SVSISTFKRVCRKYGINRWPPRNVDKV 277 4999*******************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	9.955	214	297	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-7	246	277	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.27E-18	313	406	No hit	No description
SMART	SM00666	2.5E-15	321	404	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.9E-17	321	401	No hit	No description
Pfam	PF00564	5.8E-16	321	402	IPR000270	PB1 domain
PROSITE profile	PS51745	25.046	321	404	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 801 aa Download sequence Send to blast
MAVLLKQEKN GNKYHKKAFM EMNRVLELLL KIYKLPLALT WAPCGACKTL LPVEDLYMDC 60 ADKTFVELHS FLMCMYGTPL RNGKGVLGRV LSSPNLLYCS DVTQFSMVEY PLAHFARECR 120 LRGCFAISLR NNYTGNDVYV LEIFMPTNNK DEDPLSSLSK ILETMKEFKN FTLASGEVLG 180 KELSVEVIEF QNGQKHHVQT LNVTGSLPSL EPLQNGGEIV QVDSSDHQSS DAEQCEIDGN 240 HPQELGTKKP SVSISTFKRV CRKYGINRWP PRNVDKVRPP PSHVDHQEEV PQLNSNLPSN 300 QASASIAHTQ PHDTVMQNAN TVNVKAKYGN DITIKFQLSL SSGLVELQQQ VAKRLNLEAG 360 SYHIKYKDEE DELILIACDE DLQDCIRTCR SPGSNAVILH IDPISQVYHT KSVTPVSYID 420 CFPASLRPYI RHVKDVAFDG NCGFRAIAGL MNIGEEDGWV QVRRDLLTEL NSHVDAYKSM 480 YEGQEMINEL THRLSWFDGC SGKDRWMTMP DMGHLIASCY NVVLYHLSHQ QCLTFLPLRS 540 VPIPAASRRE IAIGFVNNNH FVEGCPRPDR PDPTLKNTFG THDDADHVQE NNDLHPPDAQ 600 PNMKSRKWKV QGDVRSLMSS KTRKEDETDN KLPEGVATEE GRPIKKQVND RRRGNGNKFS 660 SEGKEERLKQ KLKPHQRGGN PEGQKPLRGE NKAVNARKLE EEVGSRKKKR TFQERIEQQK 720 ERKKAKKNKD PLGRDVVDKL DMLIEQYRSK FSQHISNKTD GEKQGASRVG DKERACDFPK 780 DKRDCTLQGD TVASTHKSDT *

Sequence ? help Back to Top

Protein Sequence Length: 801 aa Download sequence Send to blast

MAVLLKQEKN GNKYHKKAFM EMNRVLELLL KIYKLPLALT WAPCGACKTL LPVEDLYMDC  60
ADKTFVELHS FLMCMYGTPL RNGKGVLGRV LSSPNLLYCS DVTQFSMVEY PLAHFARECR  120
LRGCFAISLR NNYTGNDVYV LEIFMPTNNK DEDPLSSLSK ILETMKEFKN FTLASGEVLG  180
KELSVEVIEF QNGQKHHVQT LNVTGSLPSL EPLQNGGEIV QVDSSDHQSS DAEQCEIDGN  240
HPQELGTKKP SVSISTFKRV CRKYGINRWP PRNVDKVRPP PSHVDHQEEV PQLNSNLPSN  300
QASASIAHTQ PHDTVMQNAN TVNVKAKYGN DITIKFQLSL SSGLVELQQQ VAKRLNLEAG  360
SYHIKYKDEE DELILIACDE DLQDCIRTCR SPGSNAVILH IDPISQVYHT KSVTPVSYID  420
CFPASLRPYI RHVKDVAFDG NCGFRAIAGL MNIGEEDGWV QVRRDLLTEL NSHVDAYKSM  480
YEGQEMINEL THRLSWFDGC SGKDRWMTMP DMGHLIASCY NVVLYHLSHQ QCLTFLPLRS  540
VPIPAASRRE IAIGFVNNNH FVEGCPRPDR PDPTLKNTFG THDDADHVQE NNDLHPPDAQ  600
PNMKSRKWKV QGDVRSLMSS KTRKEDETDN KLPEGVATEE GRPIKKQVND RRRGNGNKFS  660
SEGKEERLKQ KLKPHQRGGN PEGQKPLRGE NKAVNARKLE EEVGSRKKKR TFQERIEQQK  720
ERKKAKKNKD PLGRDVVDKL DMLIEQYRSK FSQHISNKTD GEKQGASRVG DKERACDFPK  780
DKRDCTLQGD TVASTHKSDT *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	262	KKPSVSISTFKRVCRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6QMR8	0.0	A0A2R6QMR8_ACTCH; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	3e-24	NIN like protein 7