PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn273891

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Nin-like

Protein Properties

Length: 531aa MW: 59968.2 Da PI: 5.9882

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn273891	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	56.4	6e-18	268	316	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ei ed+ +y +l+ dAA++L+v+ ++ Kr CRq+GI+RWP Rk+ ++ Achn273891 268 EIPYEDILHYSKLSRSDAARNLEVSISTFKRVCRQHGISRWPPRKVDKV 316 57789*****************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.936	252	336	IPR003035	RWP-RK domain
Pfam	PF02042	2.8E-15	270	316	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.18E-9	355	446	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.5E-8	361	438	No hit	No description
PROSITE profile	PS51745	14.614	361	445	IPR000270	PB1 domain
SMART	SM00666	2.6E-7	361	445	IPR000270	PB1 domain
Pfam	PF00564	2.4E-10	361	424	IPR000270	PB1 domain
CDD	cd05992	2.75E-7	362	423	No hit	No description
PROSITE profile	PS51745	21.79	447	530	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	6.5E-15	447	519	No hit	No description
SuperFamily	SSF54277	8.41E-14	447	523	No hit	No description
SMART	SM00666	3.6E-16	447	530	IPR000270	PB1 domain
Pfam	PF00564	9.0E-16	448	526	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MAVLSKQKKK NNKAHQDALM KIERVLKLVC KIHEIPLALT WVPCGACETL LPIKEDLCIF 60 WDYNDVTISD LYDFLMSRFG PPLRNGIGVV GRALTSPNLL YCSDVTQFSM AEYPWAHFAR 120 QCRLRDCFAI SLWSNYTGND IYVLEIFLPA SNTDEDSFTS LSKILETMKK EFKTFRFASG 180 EELGEELSVE VIEFQNGQKR HYVQTLHVTG SLPSLEPLQN GGEIMQVDSS DHQSIDAEQC 240 EIDANHPQEL GTNKTLGREH KNTGVRIEIP YEDILHYSKL SRSDAARNLE VSISTFKRVC 300 RQHGISRWPP RKVDKVRHPR PSHVDHHEEV PQLISNLPSN QASARIAHTQ PHDTALQIAN 360 TVNVKAKYVK GLTLLFPLSL SSTLEELYEC IETRLDLSRG TYHACYIDGD NDKITVTCDQ 420 DLQVWLCDSP RLSGSSAVVL HIDPVSQVTV RAKYVNDITI KFQLSLSSGL VELQQQVAKR 480 LNLEAGSYHI KYKDEEDELI LIACDEDLQD CIHTCRSLDS TSIAVLLELK *

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MAVLSKQKKK NNKAHQDALM KIERVLKLVC KIHEIPLALT WVPCGACETL LPIKEDLCIF  60
WDYNDVTISD LYDFLMSRFG PPLRNGIGVV GRALTSPNLL YCSDVTQFSM AEYPWAHFAR  120
QCRLRDCFAI SLWSNYTGND IYVLEIFLPA SNTDEDSFTS LSKILETMKK EFKTFRFASG  180
EELGEELSVE VIEFQNGQKR HYVQTLHVTG SLPSLEPLQN GGEIMQVDSS DHQSIDAEQC  240
EIDANHPQEL GTNKTLGREH KNTGVRIEIP YEDILHYSKL SRSDAARNLE VSISTFKRVC  300
RQHGISRWPP RKVDKVRHPR PSHVDHHEEV PQLISNLPSN QASARIAHTQ PHDTALQIAN  360
TVNVKAKYVK GLTLLFPLSL SSTLEELYEC IETRLDLSRG TYHACYIDGD NDKITVTCDQ  420
DLQVWLCDSP RLSGSSAVVL HIDPVSQVTV RAKYVNDITI KFQLSLSSGL VELQQQVAKR  480
LNLEAGSYHI KYKDEEDELI LIACDEDLQD CIHTCRSLDS TSIAVLLELK *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028113989.1	1e-117	protein NLP7-like
TrEMBL	A0A2R6QMR0	0.0	A0A2R6QMR0_ACTCH; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	8e-51	Nin-like family protein