PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn274231
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 170aa    MW: 20104.2 Da    PI: 10.0706
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn274231genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000446992123
                EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                ++C++C+k+F+    L +H  + H
  Achn274231 69 WRCGYCKKVFRAEKFLDQHFDNrH 92
                58**********999999976655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002807192IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MERRVMLYKF LFVSLFLQAR IGVTLANQYL MPFVEQEKYE ISRKCRLHPD FDIFRDQEQH  60
KIHVDVNEWR CGYCKKVFRA EKFLDQHFDN RHNDLLNVSL ADSCFPMNQS PSANRLHELF  120
LRQFCDAHTC SGGRKPFSRG KRRKEKRNPS VEAHLTTWTK TKALLVGKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022882631.13e-69uncharacterized protein LOC111399490 isoform X5
TrEMBLA0A2R6PDV52e-86A0A2R6PDV5_ACTCH; Zinc finger C2H2 protein like
STRINGXP_002511255.16e-66(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80841216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.17e-53C2H2-like zinc finger protein