PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn275271
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 106aa    MW: 12386.1 Da    PI: 9.5905
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn275271genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.35.1e-083375790
        FAR1 57 etrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                +tr gC+ ++ v+ ++  +k++++++++eHnH+l 
  Achn275271  3 KTRLGCQVTFIVRYDRkASKYVIANFVNEHNHPLE 37
                799**********99989***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-5337IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MDKTRLGCQV TFIVRYDRKA SKYVIANFVN EHNHPLEEPH SAHFLLLHSK KSMDPIRPHR  60
VRRGLFNIDR RVYRSVRLEH DHTQVSSYDV QVDQIISFTI AEGCN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.13e-07FAR1 family protein