PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn275891
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 249aa    MW: 27894.6 Da    PI: 6.5261
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn275891genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-1879128155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GVr+++ +gr++AeIrd      + +r +lg+++tae Aa  +++a+ +++g
  Achn275891  79 SKYRGVRRRP-WGRFAAEIRDT-----SgARLWLGTYDTAEAAAMVYDKAAIRIRG 128
                 89********.**********4.....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-1279128IPR001471AP2/ERF domain
CDDcd000181.77E-2779134No hitNo description
SuperFamilySSF541711.11E-1879135IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.4E-2680134IPR001471AP2/ERF domain
SMARTSM003805.8E-2980142IPR001471AP2/ERF domain
PROSITE profilePS5103221.49680136IPR001471AP2/ERF domain
PRINTSPR003672.2E-98192IPR001471AP2/ERF domain
PRINTSPR003672.2E-9102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSAKTPRIVR IYVTDADATD SSSDDDAPLP RDRAKKNRKH VTEIRIERDC NNANRIASKK  60
KRPKKRVTLV NTAAAALGSK YRGVRRRPWG RFAAEIRDTS GARLWLGTYD TAEAAAMVYD  120
KAAIRIRGPN AFTNIIEPPA RPPPTPPAID LTGKDRRNLT SPTSVLRFDH EIQSLQDDCL  180
PLDPCFLNDF FDFRSPSPII FEEVCLMDNV LDSNLSDLCD VSPVNLDEDF RSCAWDVDDF  240
FQDPLVVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2076134161ATERF1
3gcc_A8e-2076134161ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028056791.11e-81LOW QUALITY PROTEIN: ethylene-responsive transcription factor CRF5-like
TrEMBLA0A2R6Q7T21e-178A0A2R6Q7T2_ACTCH; Ethylene-responsive transcription factor
STRINGGorai.001G156900.19e-63(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.17e-33cytokinin response factor 5