PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn278081
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 227aa    MW: 25047.9 Da    PI: 4.2255
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn278081genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.11.3e-1037602347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     +W++Ia++++ gRt++++k++w+++
       Achn278081 37 RWSKIASHLP-GRTDNEIKNHWNTH 60
                     6*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.21E-103270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-153472IPR009057Homeodomain-like
PROSITE profilePS500906.9343461IPR017877Myb-like domain
CDDcd001676.21E-93461No hitNo description
PfamPF002493.0E-83760IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MIESISGFKI QMQKEIEVFF LNSENCYGVC GIAGLLRWSK IASHLPGRTD NEIKNHWNTH  60
IKKKLKKMGI DPLTHKPLPT NNNPINDDPP QKPPKDQDLL HPPPRSICEI TSEVGPNIEP  120
PIDQVNNGFC TDEVPLIEPH EINLVSSTSS SSSSSSSSYE DGNSVNIFED FLDLPCFDWG  180
YGLGFGDDDD GIRSSSLDFL IGGDSDGTQY SSMVVDQECM NLFELL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016482710.17e-38PREDICTED: protein ODORANT1-like
RefseqXP_016508400.14e-38PREDICTED: protein ODORANT1-like, partial
TrEMBLA0A2R6RJ551e-134A0A2R6RJ55_ACTCH; Uncharacterized protein
STRINGXP_009616533.19e-37(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.11e-26myb domain protein 43