PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn278561

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Trihelix

Protein Properties

Length: 108aa MW: 12573.4 Da PI: 8.737

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn278561	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	35.1	3.6e-11	1	46	38	86
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 mre+ f rs+++C++kw+nl k++kk ++++++++ s + + +++le Achn278561 1 MREKEFDRSATMCTDKWRNLLKEFKKARHQDRSGA---SAKLSCYKELE 46 89******************************984...55567888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-7	1	48	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MREKEFDRSA TMCTDKWRNL LKEFKKARHQ DRSGASAKLS CYKELEELLR DRGKNGAYKG 60 PTTFRKSNCI FSFRIKVIVE SDLSVCLTCF GLIVNSYVWE LEYWDGE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	3e-18	1	44	43	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028072987.1	2e-30	mediator of RNA polymerase II transcription subunit 15a-like isoform X1
Refseq	XP_028072988.1	2e-30	mediator of RNA polymerase II transcription subunit 15a-like isoform X1
Refseq	XP_028072989.1	2e-30	mediator of RNA polymerase II transcription subunit 15a-like isoform X1
Refseq	XP_028072990.1	2e-30	trihelix transcription factor GT-4-like isoform X2
Swissprot	Q9FX53	1e-21	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A2R6QP65	1e-72	A0A2R6QP65_ACTCH; Trihelix transcription factor GT-1 like
STRING	cassava4.1_009069m	5e-26	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.3	4e-25	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]