PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn278571
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 292aa    MW: 32855.4 Da    PI: 5.8834
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn278571genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.8e-31140198259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+vers++dp ++++tY+ eHnh+
  Achn278571 140 SDTWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERSRSDPVMFIVTYTAEHNHP 198
                 79************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-31131200IPR003657WRKY domain
PROSITE profilePS5081134.693134200IPR003657WRKY domain
SuperFamilySSF1182906.54E-27137200IPR003657WRKY domain
SMARTSM007741.2E-36139199IPR003657WRKY domain
PfamPF031065.6E-26141198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEDDWDLYAV VRGCATSSFA AAATTSCSLD FHLPSIFQPK EDQFLFLSDP FEPRHSESSK  60
ELYDLFKPFS PKSPFSVLGG LQDLSPPPTT KTQNRRQQSQ QKQEKQQQNH SASHNPSPRS  120
KRRKNQLKRV CEVPAEGLSS DTWSWRKYGQ KPIKGSPYPR GYYRCSTSKG CLARKQVERS  180
RSDPVMFIVT YTAEHNHPMP THRNSLAGIT RPKPINPESV TAVDASKSPS EEKMESRDER  240
ESEEDDEFCV SDMGIEDLSD DFFEGLEGLA CLSTGDGFSD HFPTIDSMVW A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-22125201380Disease resistance protein RRS1
5w3x_D3e-22125201380Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2297632e-37KP229763.1 UNVERIFIED: Boehmeria nivea WRKY transcription factor-like (WRKY34) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229932.11e-99WRKY transcription factor 22
SwissprotO046093e-73WRK22_ARATH; WRKY transcription factor 22
TrEMBLA0A2R6QP401e-177A0A2R6QP40_ACTCH; WRKY transcription factor
STRINGSolyc01g095100.2.15e-99(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.17e-67WRKY family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  3. Gkizi D, et al.
    The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae.
    Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23
    [PMID:26780421]
  4. Kloth KJ, et al.
    AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling.
    J. Exp. Bot., 2016. 67(11): p. 3383-96
    [PMID:27107291]
  5. Camborde L, et al.
    Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy.
    Nat Protoc, 2017. 12(9): p. 1933-1950
    [PMID:28837131]
  6. Wang S, et al.
    Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322
    [PMID:29090631]