PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn279951

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 194aa MW: 22067.8 Da PI: 4.4829

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn279951	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	126.6	2e-39	9	127	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrF Ptdeelvv++L++k++ +++ evi+++d+y ++Pw+L+ k+ ae ++wyfFs++ +nr+t +gyWk g d++++++ +++ Achn279951 9 LPPGFRFYPTDEELVVHFLHRKAALLPCNP-EVIPDLDLYPYDPWELDGKAMAEGNKWYFFSRKT--------ANRITGNGYWKPLGVDEPIFTSASKK 98 79***********************999.99**********977778899*9974........58******************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kk vfy g++p+g+kt+W+m+ey l Achn279951 99 VGMKKCYVFYIGEEPEGVKTNWIMQEYML 127 *************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.37E-50	6	157	IPR003441	NAC domain
PROSITE profile	PS51005	46.495	9	159	IPR003441	NAC domain
Pfam	PF02365	3.1E-23	10	126	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MGDDNNVNLP PGFRFYPTDE ELVVHFLHRK AALLPCNPEV IPDLDLYPYD PWELDGKAMA 60 EGNKWYFFSR KTANRITGNG YWKPLGVDEP IFTSASKKVG MKKCYVFYIG EEPEGVKTNW 120 IMQEYMLSES GSSSSRSSKR RGNPKVDYSK WVLCRVYEHD CDDGGGDGME LSCLDEVFLS 180 LDDLDEISFP NYN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-45	5	161	13	167	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-45	5	161	13	167	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-45	5	161	13	167	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-45	5	161	13	167	NO APICAL MERISTEM PROTEIN
3swm_A	8e-45	5	160	16	169	NAC domain-containing protein 19
3swm_B	8e-45	5	160	16	169	NAC domain-containing protein 19
3swm_C	8e-45	5	160	16	169	NAC domain-containing protein 19
3swm_D	8e-45	5	160	16	169	NAC domain-containing protein 19
3swp_A	8e-45	5	160	16	169	NAC domain-containing protein 19
3swp_B	8e-45	5	160	16	169	NAC domain-containing protein 19
3swp_C	8e-45	5	160	16	169	NAC domain-containing protein 19
3swp_D	8e-45	5	160	16	169	NAC domain-containing protein 19
4dul_A	8e-45	5	161	13	167	NAC domain-containing protein 19
4dul_B	8e-45	5	161	13	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028059124.1	1e-110	NAC domain-containing protein 104-like
Swissprot	Q8GWK6	4e-79	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A2R6RGN9	1e-140	A0A2R6RGN9_ACTCH; NAC domain-containing protein
STRING	XP_009622295.1	3e-98	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3766	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	6e-80	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]