PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn281601
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 178aa    MW: 19857.3 Da    PI: 7.0416
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn281601genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.5e-182267147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd ll + v+++G  +W++I++ ++ gR++k+c++rw + 
       Achn281601 22 KGPWSPEEDMLLEEIVQRHGAQNWSLISKWIP-GRSGKSCRLRWCNQ 67
                     79******************************.***********985 PP
2Myb_DNA-binding49.41.1e-1576118347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T eEd  +++a++q+G++ W+tIa+++  gRt++ +k++w++ 
       Achn281601  76 PFTLEEDAFILQAHAQFGNK-WATIASYLY-GRTDNAVKNHWHST 118
                      89******************.********9.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.4641772IPR017930Myb domain
SuperFamilySSF466892.05E-3220115IPR009057Homeodomain-like
SMARTSM007174.6E-142170IPR001005SANT/Myb domain
PfamPF002496.8E-182267IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-252375IPR009057Homeodomain-like
CDDcd001673.13E-142466No hitNo description
SMARTSM007171.1E-1273121IPR001005SANT/Myb domain
PROSITE profilePS5129419.42774123IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2176122IPR009057Homeodomain-like
CDDcd001671.83E-1076119No hitNo description
PfamPF002492.4E-1376117IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDQMETQSLT IEGTQQNVYR VKGPWSPEED MLLEEIVQRH GAQNWSLISK WIPGRSGKSC  60
RLRWCNQLSP KVEHRPFTLE EDAFILQAHA QFGNKWATIA SYLYGRTDNA VKNHWHSTLK  120
RKYPALVEGG GSDENAVQAP NSYGNVDITV PMSGLCANLE SPYGSNVSGS SFPLMSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-36211226107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028110901.12e-67transcription factor MYB44-like
SwissprotO231607e-57MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2R6Q5Z11e-112A0A2R6Q5Z1_ACTCH; Transcription factor like
STRINGcassava4.1_023141m6e-65(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15862471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-59myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]