PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn281761
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 252aa    MW: 28311.2 Da    PI: 8.8075
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn281761genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84e-1392138354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h e+Er+RRd++N++f +Lr+++P+       K++ a+ L  Av YI +L
  Achn281761  92 MNHVEAERQRRDKLNHGFYKLRSVVPNV-----SKMDRASLLSDAVAYIEEL 138
                 68*************************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-1780151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.72E-1389143No hitNo description
PROSITE profilePS5088816.36189138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1092138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-1693153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1495144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDEINSSSSS QSFLFQGFSQ DPFPNRNLSL QDFDIYGEPI GAYAETQLKG DLKREMNITV  60
QSFFESGPSD HEGHVRCKNR GKKATMGQEK LMNHVEAERQ RRDKLNHGFY KLRSVVPNVS  120
KMDRASLLSD AVAYIEELKA KIKILEANVG QRKHKACVMD RHGNYQSTST WSGEVGVKIL  180
GSEALIRVQC ADVNFPSARL MGVMRDLELQ IHHASVSKVK EVMLQDVVVR VPHGFTTEEA  240
LRTAILTRFQ V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-2386142157Transcription factor MYC2
5gnj_B3e-2386142157Transcription factor MYC2
5gnj_E3e-2386142157Transcription factor MYC2
5gnj_F3e-2386142157Transcription factor MYC2
5gnj_G3e-2386142157Transcription factor MYC2
5gnj_I3e-2386142157Transcription factor MYC2
5gnj_M3e-2386142157Transcription factor MYC2
5gnj_N3e-2386142157Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028075552.13e-78transcription factor MYC3-like
TrEMBLA0A2R6QMU80.0A0A2R6QMU8_ACTCH; Transcription factor like
STRINGVIT_02s0025g02610.t017e-68(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.13e-46bHLH family protein