PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn282711
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 242aa    MW: 27813.3 Da    PI: 8.58
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn282711genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.52e-173891356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                + ++f++eq++ Le+ Fe+++    ++++ LA+klgL+ rqV +WFqNrRa+ k
  Achn282711 38 NNRRFNDEQIKSLESIFEMESRSELQTKQLLADKLGLQPRQVAIWFQNRRARSK 91
                5579************************************************99 PP
2HD-ZIP_I/II95.26.6e-3138129293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  + rr+++eq+k+LE+ Fe+e++ e + K+ la +Lglqprqva+WFqnrRAR k+k +E++   Lk++y++l+++ ++L+k+++ L  +l++
   Achn282711  38 NNRRFNDEQIKSLESIFEMESRSELQTKQLLADKLGLQPRQVAIWFQNRRARSKSKLIEQENGILKSRYNTLASKLDSLKKDNQCLMIQLQR 129
                  579***********************************************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.95E-162492IPR009057Homeodomain-like
PROSITE profilePS5007116.733393IPR001356Homeobox domain
SMARTSM003891.6E-133697IPR001356Homeobox domain
CDDcd000866.86E-133793No hitNo description
PfamPF000468.7E-153891IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-163998IPR009057Homeodomain-like
PROSITE patternPS0002706891IPR017970Homeobox, conserved site
PfamPF021835.1E-1095134IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MLTRRDDSVA NRTIATETEI SLSELSVMES IRKSRNKNNR RFNDEQIKSL ESIFEMESRS  60
ELQTKQLLAD KLGLQPRQVA IWFQNRRARS KSKLIEQENG ILKSRYNTLA SKLDSLKKDN  120
QCLMIQLQRL RNLMEKAQAS RNRGVGQIRK SIGEEYDRDT KSTAGGVTNL PSECYKNEPQ  180
VPLCYDTSDN VRYFGEETDI LNMTQVVPDG SFTSSENWCS FKSCSVLEHP SCNSQRWDLW  240
P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6QMX11e-174A0A2R6QMX1_ACTCH; Homeobox-leucine zipper protein like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102732125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.15e-32homeobox 12