PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn283201
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 298aa    MW: 33774.5 Da    PI: 6.0621
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn283201genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12250275126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 y   +C+++ +tG+C yGd+CkF+H+
  Achn283201 250 YQPDICKDYKETGYCGYGDTCKFIHD 275
                 67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9246280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53249277IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-7249276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-12250278IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-10250275IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MLLSTSAKWN LPSLTCFSIN VDTLLSKGQA NQLQELHYER SNWELAWCQG YQCVEMESDT  60
QDILDLVDSL PNKHSNGFCN FFRKPAKNKN IRKRTIDEDE DETSKTESSL IHNNKKPPLL  120
DNKLYFSTVP SKLSMSSKSN VESSTPIFQF ESSKEMHVQG SKATATLETE TEFSKDARAI  180
RESALNQAED ALKGKTKNSE DEKLYKGIHG YTDHKVGSQR EQTVSMEKAG GAHGPLRASA  240
HIKVTTRFDY QPDICKDYKE TGYCGYGDTC KFIHDRGDFN SGWQLEEEWE EVEKARK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M9e-33152291105238RING finger protein 113A
5z58_M9e-33152291105238RING finger protein 113A
6ff4_t9e-33152291105238RING finger protein 113A
6ff7_t9e-33152291105238RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028112176.11e-120zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-103C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A2R6R9I71e-151A0A2R6R9I7_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_002522169.11e-119(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.13e-89C3H family protein