PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn285051
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 484aa    MW: 54888.9 Da    PI: 5.8691
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn285051genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-065172426
                ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                ++C f++  G+C+ GdrC+F H 
  Achn285051 51 VPCYFYFN-GFCSKGDRCSFLHR 72
                79******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.1264774IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-64772IPR000571Zinc finger, CCCH-type
SMARTSM003560.00164873IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-55274IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MDEELLKRFT DCVYFLASPL TCKKPLDAHT EVSSESAPAH QSTASVNKFS VPCYFYFNGF  60
CSKGDRCSFL HRPPEDATPA LKSSNTPSAV NGAPPPLENK TSAVSDAGSA PIETLPNPSE  120
FASKRSVQKQ INLIADFCLS SLDNVKDQNG SPQMSASECE EASPVRSDIF LPGRDLIQHE  180
SLLSTDQSSE ELVDGHVERE DYLESSPGFD VLVDDDRLEN LGYEDDPDYL PAIDREGRGL  240
NGHIPEYDHE DPTEDDPTYP DARMYYEQER LYASDLFDNE QRFYYFRNFY GRSREEILDP  300
IMPLKRKFLV TDGHRGVDLR DRLKKRRVID GRLGTHFSRR NNSALLVDRS RERSRHLLTD  360
KNPRDSFKPS HSKGLWQRYR EKRWSKRQIL SSEVSKKPFL SSEVSKKPVS RKRRSTEEST  420
VFSGPKTLSQ IKEEKRKATE NGNSYGWLGD FSSGNVSEEF QGPKPLSEIL KEKNKMGPVT  480
DSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304326KRKFLVTDGHRGVDLRDRLKKRR
2320326DRLKKRR
3395411KKPFLSSEVSKKPVSRK
4409414SRKRRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028069315.10.0zinc finger CCCH domain-containing protein 34-like
TrEMBLA0A2R6S1X10.0A0A2R6S1X1_ACTCH; Zinc finger CCCH domain-containing protein
STRINGVIT_11s0016g04980.t011e-122(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11433911