PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn285481
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 144aa    MW: 16212 Da    PI: 7.3575
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn285481genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-171261255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +ykGVr +k +g+WvAeIr+p   +kr r++lg++ t+  Aa a++ a  +l+g
  Achn285481 12 RYKGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPAAAAMAYDTAVYYLRG 61
                7******99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.42E-211271No hitNo description
Gene3DG3DSA:3.30.730.105.2E-301271IPR001471AP2/ERF domain
SMARTSM003801.8E-361275IPR001471AP2/ERF domain
PROSITE profilePS5103222.2211269IPR001471AP2/ERF domain
PfamPF008475.6E-121261IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-211270IPR016177DNA-binding domain
PRINTSPR003672.0E-111324IPR001471AP2/ERF domain
PRINTSPR003672.0E-115171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MEGGEKRKSE RRYKGVRMRK WGKWVAEIRE PNKRSRIWLG SYSTPAAAAM AYDTAVYYLR  60
GPSARLNFPE HAPEADGGQR ELSAETIRKK AIEIGARNDA IEASSVGGRD NGPSGFKPCW  120
FEEKPDLNKR PEPEDPEDVD DDW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-151169463ATERF1
3gcc_A4e-151169463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028061226.19e-68ethylene-responsive transcription factor RAP2-10-like
SwissprotQ9SNE14e-46ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLA0A2R6S1F22e-80A0A2R6S1F2_ACTCH; Ethylene-responsive transcription factor RAP2-10 like
STRINGXP_009599928.14e-61(Nicotiana tomentosiformis)
STRINGPGSC0003DMT4000102283e-61(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.15e-36cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shen PC,Hour AL,Liu LD
    Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis.
    Bot Stud, 2017. 58(1): p. 22
    [PMID:28510204]