PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn286831
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 204aa    MW: 21321.1 Da    PI: 8.6913
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn286831genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.4e-07223627
                -SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                C+ +     C++Gd+C+FaHg+
  Achn286831  2 CNKYNTAEGCRFGDKCHFAHGE 23
                999999999***********96 PP
2zf-CCCH391.4e-12169193126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC +fa+ GtC +G+rC+FaHg
  Achn286831 169 FKTKLCENFAK-GTCTFGERCNFAHG 193
                 69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035613123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-10128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.033124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6127IPR000571Zinc finger, CCCH-type
PfamPF146080.022222No hitNo description
SuperFamilySSF547914.71E-1362143IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.7E-1370140IPR004088K Homology domain, type 1
SMARTSM003221.4E-871141IPR004087K Homology domain
PROSITE profilePS5008413.0272136IPR004088K Homology domain, type 1
PfamPF000132.8E-974138IPR004088K Homology domain, type 1
CDDcd001053.67E-1176136No hitNo description
Gene3DG3DSA:4.10.1000.106.3E-16164199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-9167199IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-7168194IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.009168195IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10169193IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MCNKYNTAEG CRFGDKCHFA HGEWELGKPM MPSYEDPRGM GPMAGGRFSG RMEPTPAAAP  60
PNPAAAAGFG ASATAKISVD GSLAGAIIGK GGVNSKRVCR VTGAKLSLRD HESDPSLKNI  120
ELEGTFDQIG QASAMVRELI VNINSSASGP PMRYNPGKQQ GSAPPANNFK TKLCENFAKG  180
TCTFGERCNF AHGADDLRKQ PGA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083138.14e-98zinc finger CCCH domain-containing protein 44-like
SwissprotQ69XQ32e-78C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A2R6QTS31e-146A0A2R6QTS3_ACTCH; Zinc finger CCCH domain-containing protein
STRINGcassava4.1_012715m7e-92(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-54C3H family protein