PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn286861
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 120aa    MW: 13079.8 Da    PI: 8.4844
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn286861genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.3e-083358227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                k + C+ +     C++Gd+C+FaHg+
  Achn286861 33 KPRMCNKYNTAEGCRFGDNCHFAHGE 58
                6789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.45E-92962IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-142963IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1693159IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-53758IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MLGSNPALPS APQKPVDPPP PSFPNGSSPP TVKPRMCNKY NTAEGCRFGD NCHFAHGEKE  60
LGKPIMPSYE DPRGMGPMAD GYVAKEDRVV NISHDQYGFR LDSMNTPIAS WISPRLRPR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022866288.12e-31zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-17C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2R6QTS35e-34A0A2R6QTS3_ACTCH; Zinc finger CCCH domain-containing protein
STRINGevm.model.supercontig_235.42e-30(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.19e-07C3H family protein