PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn287391

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 259aa MW: 29492.4 Da PI: 5.5882

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn287391	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.6	2.8e-25	80	170	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eYAk++GF++r+++ ++s+++ i+ r+fvCs+eg+r+ ++ +++ +r+ tr gCka++++ ++ +w vtk++ HnH+l+ Achn287391 80 DFYYEYAKRTGFTIRTNRIRHSQKDMAIIGRDFVCSREGFRAAKHVLrKDRVLPPRPITREGCKAMIRLAARDGRTWIVTKFVRVHNHKLM 170 6***************************************9988723333459********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.2E-23	80	170	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MVDSSGGHDF FETDGGSDEE TFENFGGHEA KEDELLHCCD SHGAINGDLL FIGSSSSGLN 60 GDCLEPFLGM AFPSLDVARD FYYEYAKRTG FTIRTNRIRH SQKDMAIIGR DFVCSREGFR 120 AAKHVLRKDR VLPPRPITRE GCKAMIRLAA RDGRTWIVTK FVRVHNHKLM TNSKFPGELP 180 IVNILSELIA RTFNLLQEEK DKKIQELNNE LQHEREQSAR FREQLCMILK DLEEHAEFMS 240 IRVEDIVHAM GEIELCDD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010650577.1	1e-121	PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2R6RRZ9	1e-179	A0A2R6RRZ9_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	VIT_05s0102g00440.t01	1e-121	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA18960	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	6e-40	FAR1 family protein