PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn287671
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 301aa    MW: 33853.8 Da    PI: 6.311
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn287671genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.53.7e-25116177159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 +dDgy+WrKYGqK++ ++++pr+YYrCt++   +C+++k+v+ ++++p +  +tY+g+H+++
  Achn287671 116 VDDGYAWRKYGQKVILNAKHPRNYYRCTHKfdqSCQATKQVQMTEDEPAMYRTTYHGHHTCK 177
                 59***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-26101177IPR003657WRKY domain
SuperFamilySSF1182903.53E-25108177IPR003657WRKY domain
PROSITE profilePS5081120.599111174IPR003657WRKY domain
SMARTSM007743.7E-37116178IPR003657WRKY domain
PfamPF031062.5E-24117177IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDSSSPEKIS GDRRKAVQEL IQGRELANQL RLVLGKPFGG VDKSVAAEDL AKKILGSFTE  60
TISILNRRTA DEVSDGRMSE DSDEITSKTS ALKDRRGCYK RRKTSQTWTR ITPSLVDDGY  120
AWRKYGQKVI LNAKHPRNYY RCTHKFDQSC QATKQVQMTE DEPAMYRTTY HGHHTCKNLL  180
KASQIILDSN PRDSSFLLSF GTENTSTKSH EPYFQPFPCI KQEYRDEKPC LNHIQSSSDD  240
YFVPPDLTVF ESCGPLTGSD QDHGDVISSG VYSCTASTTS LEMDMVVGAV DFCDVFEFEF  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-23116177869OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250|UniProtKB:Q9LY00, ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:21898085}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269|PubMed:21898085}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028094837.11e-123probable WRKY transcription factor 70
SwissprotK4BIZ92e-47WRK70_SOLLC; WRKY DNA-binding transcription factor 70
TrEMBLA0A2R6RRW90.0A0A2R6RRW9_ACTCH; WRKY transcription factor 70
STRINGEOY044381e-96(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42302143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-47WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]