PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn287951

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

GRAS

Protein Properties

Length: 522aa MW: 59140.3 Da PI: 4.7562

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn287951	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	119.2	5.2e-37	150	520	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 v+l+ + eav++++ ela+ + +r++e++sp g m+Rl y+ + L ++ +++s ++ aa+k+f+e++P+ kf+h++aN Achn287951 150 VHLVKAYGEAVDTEQRELAKVIAERIRERVSPVGGVMERLLCYLFQPLDKQACY----------LKQES---GKNFHAAFKAFYEIFPYGKFAHFAANL 235 677888889*************************************999887..........34444...7888999**************** PP GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledl..el 191 Il+a+ ++ e +HiiDfd++ G+QW ++++a+ ++ ++++T ++ +e + + + eet++ L + A+++g+++ + + +l+dl ++ Achn287951 236 EILKALPHDvEVIHIIDFDMGAGIQWSSMIEAIRG---QQREIKLTSIKWSEGDyncdpTRWRFEETKRWLCDHARTFGLKLTVDSM---KLHDLvsKI 328 **9998899**************9965...5678***97777999988999******************97...677772244 PP GRAS 192 eeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvksl..........sPkvvvvveqe..adhnse.sFlerflealeyysalfdslea 273 ++++ + + la n+++ l ++ v +++ +e+L + k+l + ++++ + a+ ns sF + l ++ al++s+e Achn287951 329 KKMK--KnggrRKWLAFNCMVGLPHMG--MVRSRKDVSEFLGAAKELlaytaifgcnNTGIITLGYGDtwAESNSYsSFGSFLDGHLVHCQALLESMEW 423 4444..24477999********8..6666666899**99333333333344555555544445554443666666678********* PP GRAS 274 klpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLv 368 ++p e+r+ +E l+ +v+ +a +++ e+ k + + +G++ ++ ++ +ak ++r + + y+++ e+++++vl W + pLv Achn287951 424 TFPIRLgEARTALEC-LFVAPLVSSIARIHKQ--EE----TKCFDVQSGFGLEGWQVCKESLVEAKEMVRAGE-NLYELKiegENNNCMVLKWGEIPLV 514 999455555555.5666666677766665..22....233455678999999999999****99988.55777666899********** PP GRAS 369 svSaWr 374 vS+Wr Achn287951 515 RVSCWR 520 ***8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	16.23	123	521	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-34	150	520	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence Send to blast
MQPDFLQYSS WSSFSNRNSS LDEFDDGLFM DSTVDHYEFS PSFTISDDSD NSIISIFPST 60 SPDQLMKLPV LAETDFSIAL DDFVIEDMPE PLEESEKSCP SQWFSMDGED GWSLSSPVNS 120 SDKSMDMSLI HASLTLPTED MELGNELRLV HLVKAYGEAV DTEQRELAKV IAERIRERVS 180 PVGGVMERLL CYLFQPLDKQ ACYLKQESGK NFHAAFKAFY EIFPYGKFAH FAANLEILKA 240 LPHDVEVIHI IDFDMGAGIQ WSSMIEAIRG QQREIKLTSI KWSEGDYNCD PTRWRFEETK 300 RWLCDHARTF GLKLTVDSMK LHDLVSKIKK MKKNGGRRKW LAFNCMVGLP HMGMVRSRKD 360 VSEFLGAAKE LLAYTAIFGC NNTGIITLGY GDTWAESNSY SSFGSFLDGH LVHCQALLES 420 MEWTFPIRLG EARTALECLF VAPLVSSIAR IHKQEETKCF DVQSGFGLEG WQVCKESLVE 480 AKEMVRAGEN LYELKIEGEN NNCMVLKWGE IPLVRVSCWR S*

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence Send to blast

MQPDFLQYSS WSSFSNRNSS LDEFDDGLFM DSTVDHYEFS PSFTISDDSD NSIISIFPST  60
SPDQLMKLPV LAETDFSIAL DDFVIEDMPE PLEESEKSCP SQWFSMDGED GWSLSSPVNS  120
SDKSMDMSLI HASLTLPTED MELGNELRLV HLVKAYGEAV DTEQRELAKV IAERIRERVS  180
PVGGVMERLL CYLFQPLDKQ ACYLKQESGK NFHAAFKAFY EIFPYGKFAH FAANLEILKA  240
LPHDVEVIHI IDFDMGAGIQ WSSMIEAIRG QQREIKLTSI KWSEGDYNCD PTRWRFEETK  300
RWLCDHARTF GLKLTVDSMK LHDLVSKIKK MKKNGGRRKW LAFNCMVGLP HMGMVRSRKD  360
VSEFLGAAKE LLAYTAIFGC NNTGIITLGY GDTWAESNSY SSFGSFLDGH LVHCQALLES  420
MEWTFPIRLG EARTALECLF VAPLVSSIAR IHKQEETKCF DVQSGFGLEG WQVCKESLVE  480
AKEMVRAGEN LYELKIEGEN NNCMVLKWGE IPLVRVSCWR S*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028057264.1	0.0	nodulation-signaling pathway 2 protein-like
TrEMBL	A0A2R6RRQ4	0.0	A0A2R6RRQ4_ACTCH; Nodulation-signaling pathway 2 protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5361	19	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	1e-19	GRAS family protein