PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn288711

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

ZF-HD

Protein Properties

Length: 209aa MW: 24226.1 Da PI: 6.0384

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn288711	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	58.1	2e-18	16	71	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGg.havDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 v Y+eC++Nh ++ +DGC +f++ +++ + al Ca CgCHR +HRre++ Achn288711 16 VIYRECQRNHSIQPHRlLLLDGCPDFVNLDHNATPELALYCATCGCHRQYHRREEV 71 79*******997651578****977778899**************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.4E-16	16	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	5.0E-6	16	69	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	16.049	18	69	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.58E-14	142	203	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.9E-20	143	202	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.5E-21	145	200	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MANNNNANAR RWATIVIYRE CQRNHSIQPH RLLLLDGCPD FVNLDHNATP ELALYCATCG 60 CHRQYHRREE VMVQVEPATV EVIHQLAVGV AAPPPHHHHG GAPLPAPQEE DGHHPVPEEN 120 LGDGEVEEEK EGEEEWRPEW VVRRRERRTR FTPEQRQAMR AYADGLEWRL QGHCEESLCR 180 FCEEIGVSPQ VFKVWMKNNK RKYYDVED*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6RGK1	1e-152	A0A2R6RGK1_ACTCH; Zinc-finger homeodomain protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75240.1	6e-10	homeobox protein 33