PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn289001
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 256aa    MW: 29846.5 Da    PI: 7.3453
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn289001genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.91.3e-192168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++vk++G g+W+++ar  g++R +k+c++rw +yl
       Achn289001 21 KGPWTAEEDSLLIEYVKLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 68
                     79********************************************97 PP
2Myb_DNA-binding49.51e-1574118147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++ +G++ W++Iar ++ gRt++++k++w+++
       Achn289001  74 RGQITPHEENIILQLHASWGNR-WSAIARSLP-GRTDNEIKNYWRTH 118
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.5081672IPR017930Myb domain
SuperFamilySSF466899.36E-3118115IPR009057Homeodomain-like
SMARTSM007175.9E-172070IPR001005SANT/Myb domain
PfamPF002497.1E-182168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-242275IPR009057Homeodomain-like
CDDcd001674.84E-122368No hitNo description
PROSITE profilePS5129419.63873123IPR017930Myb domain
SMARTSM007177.0E-1573121IPR001005SANT/Myb domain
PfamPF002491.2E-1374118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2476122IPR009057Homeodomain-like
CDDcd001673.44E-1078119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MSWEMMADHL AWGVIEEGWR KGPWTAEEDS LLIEYVKLHG EGRWNSVARL AGLKRNGKSC  60
RLRWVNYLRP DLKRGQITPH EENIILQLHA SWGNRWSAIA RSLPGRTDNE IKNYWRTHFK  120
KKANSNSSPD ANEKAKARML KRQQFQHQQH HHHHHHHHHQ NQQLMDELDM KKFMSLLDEN  180
ENRVSSLPQA RQDTVTLYPN DTAGEEQGTF YPLLNSYMAL PEATHEENIL WDGMWNLDDV  240
HGNFSMACAL ATPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-262112327128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4743313e-33AM474331.1 Vitis vinifera contig VV79X001023.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021291303.11e-119transcription factor MYB2-like isoform X2
TrEMBLA0A2R6S0Z71e-169A0A2R6S0Z7_ACTCH; Transcription factor like
STRINGEOY062371e-115(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.15e-84myb domain protein 305