PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn289221
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 720aa    MW: 77753.2 Da    PI: 6.1651
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn289221genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.8e-32314371260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +D ynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y g Hnh+k
  Achn289221 314 EDAYNWRKYGQKQVKGSEHPRSYYKCTHPNCPVKKKVERSH-EGHITEIIYDGAHNHPK 371
                 7****************************************.***************85 PP
2WRKY43.94.8e-145495872159
                 -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +sYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  Achn289221 549 RKSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 587
                 469***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-28306371IPR003657WRKY domain
PROSITE profilePS5081122.217308372IPR003657WRKY domain
SuperFamilySSF1182907.72E-25310371IPR003657WRKY domain
SMARTSM007741.5E-35313371IPR003657WRKY domain
PfamPF031061.8E-24314370IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.5E-19527589IPR003657WRKY domain
SuperFamilySSF1182903.4E-17534589IPR003657WRKY domain
PROSITE profilePS5081124.386537589IPR003657WRKY domain
SMARTSM007741.6E-17542588IPR003657WRKY domain
PfamPF031067.9E-9549587IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MGGFDDHVAI IGDWVPPSPS PISFFSALGD EISSRSITEL SFENRNASLF SGPQEKIISG  60
RNDENDRPQA GDQPAEPNVF SEQKMNSGGG LLERMAARTG FNAPRLNTES IRPTDLSLNS  120
DVRSPYLMIP PGLSPTTLLE SPVFLSNSLV LPSPTTGKFP FSLSGNGKNS TLAVEAPRKS  180
KENLFEDADT SSFAFKPVAA SGPSLSLGPT GKVNPPNLPR QNFSGIEFSV QPENSLKSQN  240
VEPPKVLSQD GTALHLHQDF SRKDTAGNTI MSEPRAVGNG GGTGEHLSPP DEQQNEEADQ  300
RGIGDTMVGG SLSEDAYNWR KYGQKQVKGS EHPRSYYKCT HPNCPVKKKV ERSHEGHITE  360
IIYDGAHNHP KLPPNRRSGI GPLYLSTDMQ LDGADQTGAQ IRADGDPIWT TVQKGTAGGA  420
PNWRNENLEV TSSASVGAEY SNAPNSLNGT HVEPGDAVDG SSTFSNEEDE DDRATHGSRS  480
LGYDAEGDES ESKRRLIHFF VMNDLYDVMV KIEAYETEMS GASRAIREPR VVVQTTSEVD  540
ILDDGYRWRK SYYKCTSAGC TVRKHVERAS HDLKSVITTY EGKHNHDIPA ARNSSHFNSG  600
TPNNGPAQFV SAAVVRPHLH RPEPSPIHNS MARFDGHPGL RSLGMPGRQQ LGPPHGFTFG  660
MNQPGLANLA MAGLGPNQGK LPVLPVHPYL GQQRLAGEMG FVLPKGEPKV EPLSLPLGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-24312590878Probable WRKY transcription factor 4
2lex_A1e-24312590878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028117015.10.0probable WRKY transcription factor 2
TrEMBLA0A2R6QD050.0A0A2R6QD05_ACTCH; WRKY transcription factor
STRINGVIT_19s0015g01870.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-159WRKY DNA-binding protein 2