PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn289591

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 204aa MW: 23756.8 Da PI: 8.1219

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn289591	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.1	7.5e-06	18	41	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C++Cg s s ks+L++H+ + H Achn289591 18 YYCEYCGISRSKKSLLTSHLLSqH 41 89******************9988 PP
2	zf-C2H2	17.6	1.1e-05	45	69	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ dC+ s++rk++L+rH+ H Achn289591 45 FSCTvdDCHFSYRRKDHLTRHLLQH 69 89*******************9887 PP
3	zf-C2H2	13.6	0.00019	74	99	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp +C++ F + n krH + H Achn289591 74 FDCPveNCPRKFAFQGNVKRHVMElH 99 679999***************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	7.8	18	41	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.62E-6	41	71	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.1E-8	41	71	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0098	45	69	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.369	45	74	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	47	69	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.64E-5	72	100	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.6E-4	72	95	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.598	74	104	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.32	74	99	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	76	99	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MEGVEEKEGP IFRDIRRYYC EYCGISRSKK SLLTSHLLSQ HKRPFSCTVD DCHFSYRRKD 60 HLTRHLLQHQ GKLFDCPVEN CPRKFAFQGN VKRHVMELHG EEASSSGVED QKHAPGCDMR 120 FSYKHVRDNH EKSGCHVYTE GDFEESDEQV RMRPRGGRKR KCPTIETLMK KRVLPPNQSD 180 SLLTREPEYI SWLLSTEAND HSC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	160	RPRGGRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269\|PubMed:12711688, ECO:0000269\|PubMed:22353599}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020987799.1	4e-49	transcription factor IIIA isoform X2
Refseq	XP_025687951.1	4e-49	transcription factor IIIA isoform X3
Swissprot	Q84MZ4	8e-25	TF3A_ARATH; Transcription factor IIIA
TrEMBL	A0A2R6QVH4	5e-63	A0A2R6QVH4_ACTCH; Transcription factor IIIA like
STRING	XP_004299009.1	2e-43	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3644	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.1	1e-24	transcription factor IIIA