PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn289751
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 177aa    MW: 19593 Da    PI: 8.108
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn289751genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.2e-0921442347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     tW++Ia +++ gRt++++k++w+++
       Achn289751 21 TWSLIAGRLP-GRTDNEIKNYWNTH 44
                     8*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001674.10E-61645No hitNo description
Gene3DG3DSA:1.10.10.602.1E-122060IPR009057Homeodomain-like
SuperFamilySSF466891.06E-72054IPR009057Homeodomain-like
PfamPF002491.2E-62144IPR001005SANT/Myb domain
PROSITE profilePS500906.3072245IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MWEVSYTIDV TLDSSQCDQI TWSLIAGRLP GRTDNEIKNY WNTHIRRKLL NRGIDPTTHR  60
PINDPAPEVT TISFATTKEE EKTAPEKRLV RENNCPDLNL ELKISPPYQN PKPEPLKTGE  120
RNSSSSSSSL CFSCSLGIQN SKGCSCTKGT SSSSSTGYVF SGLKNGVLDY RSLEMK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028099008.15e-68myb-related protein 308-like
RefseqXP_028113336.15e-68myb-related protein 308-like
SwissprotP813938e-49MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A2R6QQ921e-107A0A2R6QQ92_ACTCH; Myb-related protein
STRINGEOX976947e-61(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.13e-30myb domain protein 7
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]