PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn290601
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 479aa    MW: 52753.3 Da    PI: 8.4515
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn290601genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-20278327255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrdp     +   r++lg+f+tae Aa+a+++a+++++g
  Achn290601 278 RYRGVRQRP-WGKWAAEIRDP-----HkaVRVWLGTFDTAEAAARAYDEAALRFRG 327
                 7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.62278335IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-22278336IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-32278336IPR001471AP2/ERF domain
SMARTSM003805.7E-37278341IPR001471AP2/ERF domain
PfamPF008471.2E-13278327IPR001471AP2/ERF domain
PRINTSPR003671.8E-11279290IPR001471AP2/ERF domain
CDDcd000181.96E-14286337No hitNo description
PRINTSPR003671.8E-11301317IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MAHTYSQTQK PNRLTLTLSL KQTSPLSPTL TPSTSRERER LRPSHNRKPP LSTIPSTTAM  60
DVESKPWESS HRHPHHRTAR FANCRLCITQ LWESSTVLGS ILSLSHTHCV ATATTLLNVE  120
AGVDMVLGRL PASDITDGAD PPLIYARPRE TSAMVRALTR VVSGRRLDET AAFGSGSGVN  180
YSPDSADFSA YDHSISGLKR EREEESGTQY SEDRIQRVYG GFSDVRDIHG ESSSVRTAAE  240
EPTNIMIPNT TATATTQQPP PPDTTTPQED QPGERRRRYR GVRQRPWGKW AAEIRDPHKA  300
VRVWLGTFDT AEAAARAYDE AALRFRGNRA KLNFPENARL LPTVVPPPPA PHFRAAHPPP  360
TAATPLPPQR AIFQSQQFYS PEIVRDYWNY SQLLQNPGDV HQLFNNSTPS FDGLNSQSLA  420
TSFSSSSSSS SSSSSYPLFF SDPQSGFFQP PESQNQGGGS DFPENSWTGP GQYPPSSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21277335160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-21277335463ATERF1
3gcc_A2e-21277335463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273278ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028106507.14e-65ethylene-responsive transcription factor ABR1-like isoform X3
TrEMBLA0A2R6Q0W71e-161A0A2R6Q0W7_ACTCH; Ethylene-responsive transcription factor
STRINGVIT_18s0072g00260.t018e-61(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.16e-14related to AP2 6