PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn292501

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

GRAS

Protein Properties

Length: 299aa MW: 34327.5 Da PI: 5.2501

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn292501	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	133.3	2.7e-41	139	294	219	374
GRAS 219 sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317 ++s+rd+vLkl+k+++P+++v+ + +ns+ F++rf eal ++sa fd++ea++pre+++r+ E+e++gr+++nv+aceg+er+er et+++ ++ Achn292501 139 ITSSPRDTVLKLIKRINPDLFVHGVLNGTYNSPFFVTRFREALFHFSAQFDMFEATVPREDQDRMLFEKEMFGRDVMNVIACEGTERVERPETYKQCQA 237 45668******************************************************************************************** PP GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r +aGF+++pl+ ++ + +++ ++k + + + v+e+ +++++gWk+r +vS+W+ Achn292501 238 RKVRAGFRQLPLDWDIIEYVRATVKKGYHKDFVVDEDGNWMLQGWKGRISHAVSCWK 294 ************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	19.645	1	274	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.2E-39	139	294	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MDKVVRGYEY PGGSINEGFK FNHKTISAFS DRFKPNHPIS EHDHEFGINP NGSNLSSGLV 60 QNSELDTPED AVLKYISQML MEEEDLEHKP CMYQDCLTLQ AAEKSFYDVL GETYPPPPSL 120 DNRSPNDNYD STTSWSSPIT SSPRDTVLKL IKRINPDLFV HGVLNGTYNS PFFVTRFREA 180 LFHFSAQFDM FEATVPREDQ DRMLFEKEMF GRDVMNVIAC EGTERVERPE TYKQCQARKV 240 RAGFRQLPLD WDIIEYVRAT VKKGYHKDFV VDEDGNWMLQ GWKGRISHAV SCWKPANV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028092078.1	3e-83	scarecrow-like protein 33
Swissprot	Q9XE58	3e-67	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2R6QJ90	1e-108	A0A2R6QJ90_ACTCH; Scarecrow-like protein
STRING	VIT_06s0004g04980.t01	1e-80	(Vitis vinifera)
STRING	cassava4.1_002718m	1e-80	(Manihot esculenta)
STRING	Migut.D02076.1.p	3e-81	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17486	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-67	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]