PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn292641
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 135aa    MW: 15387.4 Da    PI: 8.47
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn292641genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR134.57e-1142131176
        FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkekdgkw 76 
                 k+Y++Y+++  F ++++ s+k  +r++ +t+  +vC kegk  ++ +k                 +k++r+ ++ ++gC+a+l++k++   kw
  Achn292641  42 KYYEDYGRQNDFWICTRISSKGqNRSDDVTSVLLVCAKEGKYVPKAEKdgvegndkragddkvlPKKRKRSCSTAKCGCNAHLRIKRD---KW 131
                 69**********9988766665367888**************9999999*************998999999999************98...44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-842132IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MEESFGLDDF EVENMKTPNN VVETLEAPSS EMSFEIIKEA RKYYEDYGRQ NDFWICTRIS  60
SKGQNRSDDV TSVLLVCAKE GKYVPKAEKD GVEGNDKRAG DDKVLPKKRK RSCSTAKCGC  120
NAHLRIKRDK WRLK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111KKRKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219733.25e-29PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2R6R5G65e-57A0A2R6R5G6_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGEMJ101652e-27(Prunus persica)