PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn293031
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 948aa    MW: 107544 Da    PI: 7.3483
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn293031genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015931123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C++sFs+ +++  H+r+H
  Achn293031  9 FVCKICSMSFSNGESMGGHMRVH 31
                89*******************99 PP
2zf-C2H211.60.00089112133223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 +C+ Cgk F +   L  H+r H
  Achn293031 112 VCKQCGKGFGSMRALYGHMRHH 133
                 6*******************99 PP
3zf-C2H210.60.0017391413123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C k+Fs+   L  H r H
  Achn293031 391 HECPICFKVFSSGQALGGHKRAH 413
                 79***********9999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.3E-4533IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01931IPR015880Zinc finger, C2H2-like
PfamPF139123.3E-4932IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.596936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.02782104IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.05582109IPR007087Zinc finger, C2H2
PROSITE patternPS00028083104IPR007087Zinc finger, C2H2
PfamPF139121.8E-783105IPR007087Zinc finger, C2H2
SuperFamilySSF576671.45E-883133No hitNo description
Gene3DG3DSA:3.30.160.603.1E-484105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.052111133IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45111138IPR007087Zinc finger, C2H2
PfamPF139129.1E-5113135IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SuperFamilySSF576674.07E-7335359No hitNo description
SMARTSM003550.22337359IPR015880Zinc finger, C2H2-like
PfamPF139123.6E-8337360IPR007087Zinc finger, C2H2
PROSITE profilePS501579.972337364IPR007087Zinc finger, C2H2
PROSITE patternPS000280339359IPR007087Zinc finger, C2H2
SuperFamilySSF576674.07E-7386413No hitNo description
SMARTSM003550.22391413IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369391413IPR007087Zinc finger, C2H2
PfamPF139122.0E-10391414IPR007087Zinc finger, C2H2
PROSITE patternPS000280393413IPR007087Zinc finger, C2H2
PfamPF015014.5E-86588920IPR002495Glycosyl transferase, family 8
SuperFamilySSF534483.94E-56622691IPR029044Nucleotide-diphospho-sugar transferases
Gene3DG3DSA:3.90.550.103.4E-71624693IPR029044Nucleotide-diphospho-sugar transferases
SuperFamilySSF534483.94E-56734944IPR029044Nucleotide-diphospho-sugar transferases
Gene3DG3DSA:3.90.550.103.4E-71736943IPR029044Nucleotide-diphospho-sugar transferases
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0016757Molecular Functiontransferase activity, transferring glycosyl groups
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 948 aa     Download sequence    Send to blast
MEEDQEQKFV CKICSMSFSN GESMGGHMRV HLGSISAKKH DEEDHKETGF EDRDDSGYGL  60
RENPKKTWRV SDSKHGIEMS KNCCKQCGKV FPSLRALSGH MRCHSIKEGE NVCKQCGKGF  120
GSMRALYGHM RHHSKRPRVQ LDTENLGPIR KKRSKKARYK MNDNFSLSNY NASCSYVSDN  180
DDELEGAAMC LIMLSRGERK FVESNSILES SENDSVIVVK AKAMHQSEEN SRYGDDAWMS  240
EKLDSAVSCS EFGDLGSEFL INCEKKAGFE VSTDGFHKGD VSKLVLSDAE IENGSKSTEV  300
ELEREFELDQ ATFDVEEPDF GGNFSEFFDD SEKKREYRCR TCNKLFDSYQ ALGGHQTSHR  360
TSSAEASAKL ECHENLVDQN TSYESKKSKD HECPICFKVF SSGQALGGHK RAHYIGLSES  420
TNKECVVTKQ ESPDMHIVCD LNFPISLEKE VGVGVDVGFK PCKNIKITAD QPTNQNQLSL  480
SLYSSSDPLR EKQSSKNNTL IRRLKLVRDF YKILNQVSTD EIPDGLKLPE SFGQLVSEMK  540
SKKYKANDFA LIIKGMMERS EREIRESKFA ALMNKHFAAS AIPKGIHCLS LRLTDEYSSN  600
AHARRQLPSP ELLPLLSDNS YYHFVLSSDN ILAASVVVTS AVQSSLKPEK MVFHVITDKK  660
TYAGMHSWFA LNPLSPAIVE VKGVHQFDWL TRENVPVLDA VENHYGIRKY YHGNHIAGAN  720
LNEITPRIFA SKLQARSPKY ISVLNHLRIY LPELFQNLDK VVFLDDDVVV QLDLSPLWEI  780
DLGGKVNGAV ETCKGEDDWV MSKRFRNYFN FSHPLIEKNL NPDECAWAYG MNIFDLCAWR  840
KTNIKHTYHT WLKQNLKSNL TMWKLGTLPP ALIAFKGHVR AIDPSWHMLG LGYQSKTKIE  900
SVKKAAVIHY NGQSKPWLEM GFEHLRPFWT KYINYSSDFI RNCHILE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.15e-43C2H2-like zinc finger protein