PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn293061
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 334aa    MW: 36711.8 Da    PI: 6.6017
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn293061genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.82.9e-30183240159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ++DgynWrKYGqK+vk se+ rsYY C++ +Cpvkkkver+  d+k++ei+Y+g+Hnhe
  Achn293061 183 MNDGYNWRKYGQKQVKTSEYLRSYYNCSHLNCPVKKKVERNF-DGKITEIIYKGQHNHE 240
                 58****************************************.***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-27177242IPR003657WRKY domain
PROSITE profilePS5081121.574178242IPR003657WRKY domain
SuperFamilySSF1182904.45E-24181242IPR003657WRKY domain
SMARTSM007749.1E-32183241IPR003657WRKY domain
PfamPF031064.6E-23184240IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MATTDGAARV SAPQRPTITL PLRSAAETLF AYGLSPGPLT MVSNFFSENA DFSSFSQLLA  60
GAMASPSFSA DNSSSENVGG EKFGFRQNRP SPFGMTHQQA LAQVTAQAAL SQCYMSVQIE  120
HQASSLAAST ESLTRHQSFD FNTTIQPVHT VISEPESSTM ESSEVSQSDR KSLPISAAMD  180
KPMNDGYNWR KYGQKQVKTS EYLRSYYNCS HLNCPVKKKV ERNFDGKITE IIYKGQHNHE  240
IPQSNKRAKD RIDMKPNTTN HAKPELGFQG ETEMSMTNES SLSLPGRDQA STQLTPPLQV  300
LGSCAHVEMG DCVRRLDEDE DKDDGPNPKR RQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-161832421474WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028091443.11e-122probable WRKY transcription factor 3
TrEMBLA0A2R6RYN20.0A0A2R6RYN2_ACTCH; WRKY transcription factor 4
STRINGVIT_14s0108g01280.t011e-109(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.25e-49WRKY DNA-binding protein 4