PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn293201

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 247aa MW: 27610.9 Da PI: 6.4484

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn293201	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.8	1.3e-05	37	85	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + erE+ Rd++N+ f eL l +a ++ + Ka+ L A++ +++L Achn293201 37 KIHKAEREKVKRDNLNELFLELSNTLEPA----HQNNGKASLLSNATRLLRDL 85 567889**********************9....78899999999999988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.728	35	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-7	36	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.05E-10	36	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MVSEAPGPLT DDIAMVKEKP VIRSSQSKNN PVKVPKKIHK AEREKVKRDN LNELFLELSN 60 TLEPAHQNNG KASLLSNATR LLRDLLCQVD SLKEENTNLL SESHYVSSEK TELREENSAL 120 QAQIEDLKIE LQERIHSKYA WKLDHSQTQH ETASQLQEDH LVMPVNDHAS QPAPVLGPLF 180 VVPLHHQDLP VYHESDTSDS VSKVPPNISR PHARYPSSSD VWPSQILAKQ SETTQIAHRT 240 SSGPNS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028096471.1	1e-119	transcription factor bHLH47-like
Refseq	XP_028096472.1	1e-119	transcription factor bHLH47-like
TrEMBL	A0A2R6RYP3	1e-173	A0A2R6RYP3_ACTCH; Transcription factor bHLH47 like
STRING	XP_010258393.1	8e-79	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4307	19	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	8e-35	bHLH family protein