PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn293561
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 320aa    MW: 34902 Da    PI: 6.971
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn293561genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012163185123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+++Fs+ + L  H  +H
  Achn293561 163 YRCKTCDRTFSSFHALGGHTTSH 185
                 9***********99998887776 PP
2zf-C2H211.50.00092205227123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+Cg  Fs+   L  H+ +H
  Achn293561 205 HECPICGVGFSSGQALGGHMTRH 227
                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.13E-8162227No hitNo description
PfamPF139121.4E-8162185IPR007087Zinc finger, C2H2
SMARTSM003550.13163185IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.549163190IPR007087Zinc finger, C2H2
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
PfamPF139122.6E-11204229IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369205232IPR007087Zinc finger, C2H2
SMARTSM003550.048205227IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDERVKPCTQ LKSWRLEPIE CHAFDRYELR NPNLRICLFW NMELVIRKQI IKGKRSKRKR  60
SRSSPIPISI SMANCSSSGE GGGGYGDNDV NTATATTTTP WYLETTDKDV EAGDILILLS  120
LGQPRDPNGD DHEKVASKFT SEQYLDRQSI GGGGGGEVGV VVYRCKTCDR TFSSFHALGG  180
HTTSHTRPKP QVASCDNPKA SSKVHECPIC GVGFSSGQAL GGHMTRHRGS VGTNNPRLSS  240
GSNEFEFQDQ EAKRGRIVLP LDLGLGLNLS APKDDRLLGS NEGFSSEQQD QQQQQQSPIV  300
LSIALALEDC HSDNVLQID*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15359KRSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028068862.13e-43zinc finger protein ZAT5
TrEMBLA0A2R6RZ201e-133A0A2R6RZ20_ACTCH; Zinc finger protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.16e-21C2H2 family protein