PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn294021
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 118aa    MW: 13558.6 Da    PI: 8.3786
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn294021genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH49.28.4e-164368126
                --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                +ktelC+ +++tG C+yG++C+FaHg
  Achn294021 43 FKTELCNKWQETGKCPYGENCQFAHG 68
                79***********************8 PP
2zf-CCCH23.78.4e-0881106126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ykte Cr  +++ tC+yG rC+F H+
  Achn294021  81 YKTEVCRMVLAGDTCPYGHRCHFRHS 106
                 9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.3E-193775IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-123974IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-94269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.4834270IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-134368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-976111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-1376109IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-580107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.18880108IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-581106IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MLKMLSLSLS LQHRARVSQR VYVPGGKTEE EALEFEVYNQ GMFKTELCNK WQETGKCPYG  60
ENCQFAHGIT ELRPVIRHPR YKTEVCRMVL AGDTCPYGHR CHFRHSLTDQ EKLLGTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-2243109470Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028071679.12e-67zinc finger CCCH domain-containing protein 14-like
SwissprotA2ZVY51e-52C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A2R6RYD66e-70A0A2R6RYD6_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_010248453.12e-63(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-53C3H family protein