PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn294101
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 225aa    MW: 25619.1 Da    PI: 8.883
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn294101genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed++lvd+++ +G g+W+t ++  g+ R++k+c++rw +yl
       Achn294101 13 KGAWTKQEDQKLVDYIRTHGEGCWRTLPKAAGLLRCGKSCRLRWINYL 60
                     79******************************99************97 PP
2Myb_DNA-binding51.32.7e-1666110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
       Achn294101  66 RGNFAQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110
                      8999******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-23463IPR009057Homeodomain-like
PROSITE profilePS5129416.535860IPR017930Myb domain
SuperFamilySSF466892.77E-2811107IPR009057Homeodomain-like
SMARTSM007172.1E-131262IPR001005SANT/Myb domain
PfamPF002492.7E-151360IPR001005SANT/Myb domain
CDDcd001678.35E-111560No hitNo description
PROSITE profilePS5129426.12961115IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-2664116IPR009057Homeodomain-like
SMARTSM007173.1E-1565113IPR001005SANT/Myb domain
PfamPF002491.1E-1466110IPR001005SANT/Myb domain
CDDcd001679.27E-1168111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MRKPCCDKQD TNKGAWTKQE DQKLVDYIRT HGEGCWRTLP KAAGLLRCGK SCRLRWINYL  60
RPDIKRGNFA QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH VKRKLISLGI  120
DPNNHRLNQT PPRPQNPCLS GSTNGPSRPS KMYLANNDLL SDAASCLEDD TSASDRDLNL  180
NLSIDVPPNL PFFGETKPQD HIKELQVTEE LVEFRRSPTL FLFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29101154108B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2254821e-127KT225482.1 Vaccinium corymbosum transcription factor MYB4 (MYB4) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007033078.21e-105PREDICTED: transcription repressor MYB6
RefseqXP_028098931.11e-105myb-related protein 330-like
SwissprotQ9S9K92e-76MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A2R6RYC31e-159A0A2R6RYC3_ACTCH; Myb-related protein
STRINGEOY040041e-105(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.18e-79myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]