PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn294781
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family SRS
Protein Properties Length: 176aa    MW: 19672.1 Da    PI: 7.0211
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn294781genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70280.73.7e-257613397154
      DUF702  97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                 ++ +e+ ++P+e++ ea f+cvrvss d++ +++aYqtav+igGh+fkGiLydqG+ee
  Achn294781  76 SHRVEVGNFPNELQMEATFQCVRVSSHDNEVDQYAYQTAVNIGGHIFKGILYDQGPEE 133
                 55677888************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.4E-2277132IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016246.8E-2484131IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MVQRPESTPR DPLYLASRPH LSIHTVWTHD AVLKPHHSRV SSLKALLQSC LNNWSTSSNW  60
VYMKEGGPLI ADLTLSHRVE VGNFPNELQM EATFQCVRVS SHDNEVDQYA YQTAVNIGGH  120
IFKGILYDQG PEETTHQPNL ITNPILPTNT TSPSTNPSAP NAFMPARYYF PYPKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028065859.11e-33protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A2R6R6Q51e-65A0A2R6R6Q5_ACTCH; Protein SHI RELATED SEQUENCE like
STRINGcassava4.1_028712m1e-23(Manihot esculenta)
STRINGXP_009607768.13e-23(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41562445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.18e-22Lateral root primordium (LRP) protein-related