PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn295121
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ARF
Protein Properties Length: 819aa    MW: 90696.6 Da    PI: 7.2315
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn295121genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.18.3e-24108209199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  Achn295121 108 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 202
                 99*****************************86555544..8************************************************..8899999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  Achn295121 203 LLGIRRA 209
                 ****997 PP
2Auxin_resp118.55.4e-39234317183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t s F+++YnPr+s+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Achn295121 234 AAHAAATISRFTIFYNPRSSPSEFVISLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 317
                 79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.32E-4992237IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-42102223IPR015300DNA-binding pseudobarrel domain
CDDcd100179.05E-22107208No hitNo description
SMARTSM010192.3E-24108210IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52108210IPR003340B3 DNA binding domain
PfamPF023624.7E-22108209IPR003340B3 DNA binding domain
PfamPF065071.8E-33234317IPR010525Auxin response factor
SuperFamilySSF542772.22E-7681760No hitNo description
PfamPF023094.8E-7682770IPR033389AUX/IAA domain
PROSITE profilePS5174524.974685769IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 819 aa     Download sequence    Send to blast
MHVLVLLFLY LLLEAAWCIS LRVIVAVSTH KEVDAHIPNY PSLPPQLICQ LHNVTMHKLK  60
ICLLQADMET DEVYAQMTLQ PLSAQEQKDA SFLPADLGVL SKQPTNYFCK TLTASDTSTH  120
GGFSVPRRAA EKVFPPLDFT QQPPAQELIA RDLHDNEWKF RHIFRGQPKR HLLTTGWSVF  180
VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHLGL LAAAAHAAAT  240
ISRFTIFYNP RSSPSEFVIS LAKYVKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI  300
SDLDPVRWPN SHWRSVKGIG VTPWMQPRID ASILGMQSNI YQAMAAAALQ EMRAVDPSKQ  360
ALPSLLQFQQ AQNVSGRSSG LMQPQMLQQS QPQPVFLRSV KDNQSQAQAQ AQAQAQVHSQ  420
SHLLQQQLQR QNSFTSQHQQ LQLPLSQQQQ HQTQLVDHQQ VSTVVSTLSP FASNSQAQSP  480
SLQAIASVCQ QQSFSDSNGN AATNAIVSPL HSLMGSFNHD ETSHLLNLPR SDTLLSSAGW  540
PPKRVAVDPL LPSASSQCIL PQVEQLGPPH TNTSQNAISL APFPGRECSI DQDGSNDPHN  600
HLLFGVNIDS SSLLMQNGMS SIRGVGTDSD STTVHFTSSN NYLSNTGTTR TNFLLNPVMT  660
PSSCIDESGF LRSPENLGQA NPPIRTFVKV YKSGSFGRSL DISKFSSYHE LRRELARMFG  720
LEGQLEDPLR SGWQLVFVDR ENDVLLLGDD PWQEFVNSVW CIKILSPEEV HQMGKHGLEL  780
LNSVPIQRLS NSNCDDYSSH QESRNLSSGI ASVGSLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1302532484385Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280959.10.0auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0B0PUT90.0A0A0B0PUT9_GOSAR; Auxin response factor
STRINGXP_009797608.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.21e-175auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]