PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn295401
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 296aa    MW: 32960.8 Da    PI: 6.1719
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn295401genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.7e-17143197256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++keq   Le+ F++n++++ ++   LAk+l+L  rqV vWFqNrRa+ k
  Achn295401 143 RKKLRLSKEQSAFLEDSFKENSTLNPKQNLGLAKQLNLRPRQVEVWFQNRRARTK 197
                 788899***********************************************98 PP
2HD-ZIP_I/II119.81.5e-38143233192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlskeq+++LE+sF+e+++L+p++   la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+ +++l+een+rL+ke +eLr +lk
   Achn295401 143 RKKLRLSKEQSAFLEDSFKENSTLNPKQNLGLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKFCETLTEENRRLQKELQELR-ALK 233
                  69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-17128197IPR009057Homeodomain-like
SuperFamilySSF466896.84E-18131200IPR009057Homeodomain-like
PROSITE profilePS5007116.682139199IPR001356Homeobox domain
SMARTSM003891.5E-12141203IPR001356Homeobox domain
CDDcd000861.15E-13143200No hitNo description
PfamPF000466.3E-15143197IPR001356Homeobox domain
PROSITE patternPS000270174197IPR017970Homeobox, conserved site
PfamPF021833.1E-9199233IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.2E-24199242IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MVSKDLGFRM EFNGRLTSQE SEEEKSGSSD PPVQLDLLPF SPVQRTQPPS QLVRFPWLTH  60
NLLSGPGLRP EEEEREEAAG QSSPNSTTVS SFQMDFSAYG SGRSKREVEI ASLNHPEVDM  120
DQGGGGSCSR TSDEEENIGL TNRKKLRLSK EQSAFLEDSF KENSTLNPKQ NLGLAKQLNL  180
RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK FCETLTEENR RLQKELQELR ALKTSKPFYM  240
QHPATTLTMC PSCERVASNS AAAAAAASEN TELTLTKSIL CPFTTSQSHA QQGGP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191199RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022882981.11e-106homeobox-leucine zipper protein HOX11-like
SwissprotP466651e-75HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A2R6P2S60.0A0A2R6P2S6_ACTCH; Homeobox-leucine zipper protein
STRINGVIT_08s0007g06670.t011e-101(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-74homeobox from Arabidopsis thaliana