PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn296141
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 239aa    MW: 27493.7 Da    PI: 4.7937
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn296141genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.42.5e-181461149
         NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49
                + pGfrFhPtdeelv +yL++kve+k+l++ e i++vdiyk++Pw+Lp+
  Achn296141 14 MLPGFRFHPTDEELVGFYLRRKVEKKSLTM-ELIQQVDIYKFDPWELPN 61
                579*************************99.89**************94 PP
2NAM36.41.6e-11649597128
         NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                 g+++glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Achn296141  64 GATIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 95 
                 6789**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-3311142IPR003441NAC domain
PROSITE profilePS5100516.93214182IPR003441NAC domain
PfamPF023651.4E-151695IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MNISDSKSRD NDVMLPGFRF HPTDEELVGF YLRRKVEKKS LTMELIQQVD IYKFDPWELP  60
NGSGATIGLK KSLVYYRGSA GKGTKTDWMM HEFRLPPPTT TNNNLHITGT AARNISTDQE  120
AVRQFLVNGW QEVWTLCRIF KRNATYKMKK YIPHEEEEEE EEEEETATAA KQSSLESDIT  180
HEHERNEQLA VDQKKNIEAV PLTPPSPYSA LIWDHDFFRD GNWEDLTSVV ELAIDPSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-2411454168NO APICAL MERISTEM PROTEIN
1ut4_B5e-2411454168NO APICAL MERISTEM PROTEIN
1ut7_A5e-2411454168NO APICAL MERISTEM PROTEIN
1ut7_B5e-2411454168NO APICAL MERISTEM PROTEIN
3swm_A4e-2411457171NAC domain-containing protein 19
3swm_B4e-2411457171NAC domain-containing protein 19
3swm_C4e-2411457171NAC domain-containing protein 19
3swm_D4e-2411457171NAC domain-containing protein 19
3swp_A4e-2411457171NAC domain-containing protein 19
3swp_B4e-2411457171NAC domain-containing protein 19
3swp_C4e-2411457171NAC domain-containing protein 19
3swp_D4e-2411457171NAC domain-containing protein 19
4dul_A5e-2411454168NAC domain-containing protein 19
4dul_B5e-2411454168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016675.12e-60PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1
SwissprotQ9SK551e-43NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2R6QYZ51e-142A0A2R6QYZ5_ACTCH; Transcription factor JUNGBRUNNEN like
STRINGPOPTR_0005s22710.13e-59(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1649745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.14e-46NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]