PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn297221
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 218aa    MW: 24893.8 Da    PI: 6.8529
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn297221genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-171865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+++++ +G g W++ ar  g++Rt+k+c++rw++yl
       Achn297221 18 KGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 65
                     79********************************************97 PP
2Myb_DNA-binding55.51.3e-1771114146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
       Achn297221  71 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 114
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-231168IPR009057Homeodomain-like
PROSITE profilePS5129416.9781365IPR017930Myb domain
SuperFamilySSF466891.46E-3015112IPR009057Homeodomain-like
SMARTSM007171.0E-121767IPR001005SANT/Myb domain
PfamPF002493.4E-161865IPR001005SANT/Myb domain
CDDcd001671.40E-102065No hitNo description
PROSITE profilePS5129425.60566120IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-2569120IPR009057Homeodomain-like
SMARTSM007171.8E-1570118IPR001005SANT/Myb domain
PfamPF002491.7E-1671114IPR001005SANT/Myb domain
CDDcd001678.13E-1375114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDKKTCNSQD FQDPEVRKGP WTMEEDLILI NYIANHGEGV WNSLARSAGL KRTGKSCRLR  60
WLNYLRPDVR RGNITPEEQL LIMELHAKWG NRWSKIAKHL PGRTDNEIKN YWRTRIQKHV  120
KQAETFDAGQ ISEHHIYPTN TAHVPGPVDH YHPVSETYSS IAYPGNDPPS TSQASCANHP  180
TFENCYADNF PAPFSTESNV SVWSMEDLWS MQLLNGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-27912018128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027073189.11e-104myb-related protein 305-like
SwissprotP813913e-94MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A2R6P9D21e-162A0A2R6P9D2_ACTCH; Myb-related protein
STRINGGLYMA16G07960.14e-95(Glycine max)
STRINGXP_009618404.12e-95(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.14e-83myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]