PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn297341

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

MYB_related

Protein Properties

Length: 132aa MW: 15194.2 Da PI: 8.4631

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn297341	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.3	8.5e-19	3	44	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + WT+eE+ +l++a+kq+G++ W+tIa++++ gRt++ +k++w+ Achn297341 3 DLWTEEEEMILIEAHKQMGNK-WATIAHKLP-GRTENTIKNHWN 44 56*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	9.4E-16	1	49	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	22.49	1	51	IPR017930	Myb domain
SuperFamily	SSF46689	5.59E-16	2	54	IPR009057	Homeodomain-like
Pfam	PF00249	2.8E-16	4	44	IPR001005	SANT/Myb domain
CDD	cd00167	2.56E-13	5	47	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-19	5	45	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MKDLWTEEEE MILIEAHKQM GNKWATIAHK LPGRTENTIK NHWNATKRRR FSKRKDKPNS 60 ILQEYIKSLS SNSVQDDAPK SPLLDQTGPI CNFDRAFNFS YGAKMSTESS AVDESNFDVK 120 GEMEFFKMLY P*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1idy_A	2e-17	2	51	5	54	MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A	2e-17	2	51	5	54	MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	54	RRFSKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269\|PubMed:16214903, ECO:0000269\|PubMed:17693534, ECO:0000269\|PubMed:17937500, ECO:0000269\|PubMed:18410484, ECO:0000269\|PubMed:23093426}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028087036.1	9e-36	transcription factor MYB98-like
Swissprot	Q9S7L2	3e-25	MYB98_ARATH; Transcription factor MYB98
TrEMBL	A0A2R6RK40	8e-55	A0A2R6RK40_ACTCH; Transcription factor like
STRING	PGSC0003DMT400046600	2e-28	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	1e-27	myb domain protein 98

Publications ? help Back to Top
Mendes MA, et al. Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis. Development, 2016. 143(15): p. 2780-90 [PMID:27338615]