PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn298101
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 231aa    MW: 26060.8 Da    PI: 4.4678
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn298101genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-081443130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     +g W++eEde+l + ++++G g+W+t+++ 
       Achn298101 14 KGLWSPEEDEKLFNHITRFGIGCWSTVPKL 43
                     678************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.44E-7643IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-11743IPR009057Homeodomain-like
PROSITE profilePS500906.725942IPR017877Myb-like domain
CDDcd001671.18E-41742No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGRQSGCVKP KLRKGLWSPE EDEKLFNHIT RFGIGCWSTV PKLAAAMSST IFYEGGLNLT  60
EGSREQFENK PVFDPLLVYE FQGNADPIGY NSSFSAQYLR PYSQSYQEVN SHLGFNSMPN  120
LTSFDHQNVA ETDFSGNSTS QMSSLLFSEV KESSSNSSIM KNMMENAEFS WDTDKFESVF  180
QCQNGIKYEE MKPSPWPEGQ LQNHNSEYFS SYPLTSLSED LARAPMDVFQ *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028060341.12e-64transcription factor MYB86-like
TrEMBLA0A2R6PDQ81e-115A0A2R6PDQ8_ACTCH; Transcription factor like
STRINGEOY208352e-48(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1877122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.14e-19myb domain protein 86